Explainable AI for Electronic Health Records and Clinical Time-Series Prediction: A Systematic Review
Keywords:
Explainable Artificial Intelligence (XAI), Electronic Health Records, Clinical Time-Series, Sepsis Prediction, Interpretable Machine LearningAbstract
Machine learning models trained on electronic health records (EHRs) and clinical time-series data now predict sepsis onset, in-hospital mortality, and readmission risk with substantial accuracy, but their high dimensionality and temporal complexity make them especially opaque to the clinicians who must act on their output. We conducted a systematic review, following PRISMA guidelines, of explainable AI (XAI) methods applied specifically to EHR and clinical time-series prediction. From 312 records identified across five databases, 30 studies met inclusion criteria and were organized into three categories: post-hoc feature-attribution methods (chiefly SHAP and LIME) applied to gradient-boosted or deep models; ante-hoc, intrinsically interpretable architectures, including attention-based recurrent networks and additive models; and studies evaluating trust, fairness, or clinical validity of these explanations. Post-hoc attribution dominates the literature and reliably identifies established clinical risk factors, but several studies show that attention weights and feature-importance scores can track spurious correlates of clinical workflow, such as medication-administration timing, rather than the underlying physiology. Ante-hoc and constraint-based models offer a promising, less-explored alternative, and fairness-auditing studies demonstrate that interpretability tools can expose demographic disparities in model behavior. Across categories, however, evidence for a genuine causal link between explanation and improved clinical decision-making remains sparse. We argue that EHR-focused XAI research should shift emphasis from producing more post-hoc explanations toward validating their clinical utility, expanding ante-hoc model adoption, and standardizing evaluation of explanation quality and fairness.
References
N Tomašev, X Glorot, JW Rae, M Zielinski, H Askham, et al. A clinically applicable approach to continuous prediction of future acute kidney injury. Nature, 2019.
E Choi, MT Bahadori, A Schuetz, et al. Doctor ai: Predicting clinical events via recurrent neural networks. In Machine Learning for Healthcare Conference, 2016.
EJ Topol. High-performance medicine: the convergence of human and artificial intelligence. Nature medicine, 2019.
S Wachter, B Mittelstadt, and L Floridi. Why a right to explanation of automated decision-making does not exist in the general data protection regulation. International data privacy law, 2017.
US Food and Drug Administration. Artificial intelligence and machine learning in software as a medical device. Technical report, US Food and Drug Administration, Silver Spring, MD, 2021.
C Zhang, S Bengio, M Hardt, B Recht, et al. Understanding deep learning (still) requires rethinking generalization. Communications of the ACM, 2021.
SM Lundberg and SI Lee. A unified approach to interpreting model predictions. In Advances in Neural Information Processing Systems, 2017.
MT Ribeiro, S Singh, and C Guestrin. " why should i trust you?" explaining the predictions of any classifier. In Proceedings of the 2016 Conference of the North American Chapter of the Association for Computational Linguistics: Demonstrations, 2016.
SS Band, A Yarahmadi, CC Hsu, M Biyari, et al. Application of explainable artificial intelligence in medical health: A systematic review of interpretability methods. Informatics in Medicine Unlocked, 2023.
MJ Page, JE McKenzie, PM Bossuyt, et al. The prisma 2020 statement: An updated guideline for reporting systematic reviews. BMJ, 372:n71, 2021.
Jiayi Gao, Yuying Lu, Negin Ashrafi, I. Domingo, K. Alaei, and M. Pishgar. Prediction of sepsis mortality in icu patients using machine learning methods. BMC Medical Informatics and Decision Making, 24, 2024.
X Li, X Xu, F Xie, X Xu, Y Sun, X Liu, X Jia, et al. A time-phased machine learning model for real-time prediction of sepsis in critical care. Critical Care Medicine, 2020.
Radwa Elshawi, M. Al-Mallah, and Sherif Sakr. On the interpretability of machine learning-based model for predicting hypertension. BMC Medical Informatics and Decision Making, 19, 2019.
Hosam F. El-Sofany, B. Bouallegue, and Y. M. A. El-Latif. A proposed technique for predicting heart disease using machine learning algorithms and an explainable ai method. Scientific Reports, 14, 2024.
J Li, S Liu, Y Hu, L Zhu, Y Mao, and J Liu. Predicting mortality in intensive care unit patients with heart failure using an interpretable machine learning model: retrospective cohort study. Journal of medical Internet research, 2022.
Duo Zuo, Lexin Yang, Yu Jin, Huan Qi, Yahui Liu, and Li Ren. Machine learning-based models for the prediction of breast cancer recurrence risk. BMC Medical Informatics and Decision Making, 23, 2023.
Krishnaraj Chadaga, Srikanth Prabhu, Niranjana Sampathila, R. Chadaga, S. Umakanth, Devadas Bhat, and Shashi Kumar G S. Explainable artificial intelligence approaches for covid-19 prognosis prediction using clinical markers. Scientific Reports, 14, 2024.
Khishigsuren Davagdorj, J. Bae, Van-Huy Pham, N. Theera-Umpon, and K. Ryu. Explainable artificial intelligence based framework for non-communicable diseases prediction. IEEE Access, 9:123672–123688, 2021.
S. Mohanty, Deborah A Lekan, T. McCoy, M. Jenkins, and Prashanti Manda. Machine learning for predicting readmission risk among the frail: Explainable ai for healthcare. Patterns, 3, 2021.
Chuizheng Meng, Loc Trinh, Nan Xu, James Enouen, and Yan Liu. Interpretability and fairness evaluation of deep learning models on mimic-iv dataset. Scientific Reports, 12, 2022.
Deepak A Kaji, J. Zech, Jun S. Kim, Samuel K. Cho, N. Dangayach, A. Costa, and E. Oermann. An attention based deep learning model of clinical events in the intensive care unit. PLoS ONE, 14, 2019.
Benjamin Shickel, T. Loftus, L. Adhikari, T. Ozrazgat-Baslanti, A. Bihorac, and Parisa Rashidi. Deepsofa: A continuous acuity score for critically ill patients using clinically interpretable deep learning. Scientific Reports, 9, 2018.
Ying Sha and May D. Wang. Interpretable predictions of clinical outcomes with an attention-based recurrent neural network. ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine, 2017:233 – 240, 2017.
Shuai Niu, Qing Yin, Jing Ma, Yunya Song, Yida Xu, Liang Bai, Wei Pan, and Xian Yang. Enhancing healthcare decision support through explainable ai models for risk prediction. Decision Support Systems, 181:114228, 2024.
Zhicheng Cui, Bradley A. Fritz, C. King, M. Avidan, and Yixin Chen. A factored generalized additive model for clinical decision support in the operating room. AMIA ... Annual Symposium proceedings. AMIA Symposium, 2019:343–352, 2019.
Mehak Arora, Hassan Mortagy, Nathan Dwarshuis, Jeffrey Wang, Philip Yang, A. Holder, Swati Gupta, and R. Kamaleswaran. Improving clinical decision support through interpretable machine learning and error handling in electronic health records. Journal of the American Medical Informatics Association : JAMIA, 2023.
S. Nemati, A. Holder, Fereshteh Razmi, Matthew D. Stanley, G. Clifford, and T. Buchman. An interpretable machine learning model for accurate prediction of sepsis in the icu. Critical care medicine, 46:547 – 553, 2017.
A. Vellido, V. Ribas, Carles Morales, Adolfo Ruiz Sanmartín, and Juan Carlos Ruiz Rodríguez. Machine learning in critical care: state-of-the-art and a sepsis case study. BioMedical Engineering OnLine, 17, 2018.
YY Jo, Y Cho, SY Lee, J Kwon, KH Kim, KH Jeon, et al. Explainable artificial intelligence to detect atrial fibrillation using electrocardiogram. International Journal of Cardiology, 2021.
Wei Qiu, Hugh Chen, A. Dincer, Scott M. Lundberg, M. Kaeberlein, and Su-In Lee. Interpretable machine learning prediction of all-cause mortality. Communications Medicine, 2, 2022.
Cecilia Panigutti, A. Perotti, and D. Pedreschi. Doctor xai: an ontology-based approach to black-box sequential data classification explanations. Proceedings of the 2020 Conference on Fairness, Accountability, and Transparency, 2020.
Esra Zihni, V. Madai, Michelle Livne, Ivana Galinovic, A. Khalil, J. Fiebach, and D. Frey. Opening the black box of artificial intelligence for clinical decision support: A study predicting stroke outcome. PLoS ONE, 15, 2019.
P. Guleria, Parvathaneni Naga Srinivasu, Shakeel Ahmed, N. Almusallam, and F. Alarfaj. Xai framework for cardiovascular disease prediction using classification techniques. Electronics, 2022.
Gangani Dharmarathne, Madhusha Bogahawaththa, Marion McAfee, Upaka Rathnayake, and D.P.P. Meddage. On the diagnosis of chronic kidney disease using a machine learning-based interface with explainable artificial intelligence. Intelligent Systems with Applications, 22:200397, 2024.
Pedro A. Moreno-Sánchez. Data-driven early diagnosis of chronic kidney disease: Development and evaluation of an explainable ai model. IEEE Access, 11:38359–38369, 2021.
Mohammed Saidul Islam, I. Hussain, Md Mezbaur Rahman, Se Jin Park, and Md. Azam Hossain. Explainable artificial intelligence model for stroke prediction using eeg signal. Sensors (Basel, Switzerland), 22, 2022.
R Agrawal, T Gupta, S Gupta, S Chauhan, P Patel, et al. Fostering trust and interpretability: integrating explainable ai (xai) with machine learning for enhanced disease prediction and decision transparency. Diagnostic Pathology, 2025.
Chang Hu, Lu Li, Wei ping Huang, Tong Wu, Qiancheng Xu, Juan Liu, and Bo Hu. Interpretable machine learning for early prediction of prognosis in sepsis: A discovery and validation study. Infectious Diseases and Therapy, 11: 1117 – 1132, 2022.
S. Bhatt, Adam Cohon, J. Rose, Natalia Majerczyk, B. Cozzi, Drew Crenshaw, and Griffin R Myers. Interpretable machine learning models for clinical decision-making in a high-need, value-based primary care setting. NEJM Catalyst, 2021.
A. R. Javed, H. Khan, M. Alomari, M. U. Sarwar, Muhammad Asim, Ahmad S. Almadhor, and Muhammad Zahid Khan. Toward explainable ai-empowered cognitive health assessment. Frontiers in Public Health, 11, 2023.
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